{"mode": "real_data", "label": "fork:pmid:28529692:abnormal-expression-of-atp1a1-and-atp1a2-in-breast-cancer-30ee8f18 GSE65194", "record": {"record_id": "fork:pmid:28529692:abnormal-expression-of-atp1a1-and-atp1a2-in-breast-cancer-30ee8f18", "science_record_source": "automated_assays_fork", "science_record_content_hash": "sha256:6b6e0f3e613ea69a20b41f87d9fff6ebd03644be269663110df054309c45900a"}, "result": {"group_count": 5, "probe_stats": [{"symbol": "ATP1A2", "feature": "203295_s_at", "p_value": 3.01690308625e-19, "q_value": 3.11801781539785e-18, "fold_change": {"Her2": 0.2246548838095195, "TNBC": 0.2307632737179656, "Luminal A": 0.22440864888078413, "Luminal B": 0.2225505114504105}, "log2_fold_change": {"Her2": -2.1542176696999995, "TNBC": -2.1155144594699995, "Luminal A": -2.1557998152999995, "Luminal B": -2.16779527859}}, {"symbol": "ATP1A2", "feature": "203296_s_at", "p_value": 1.70777666013e-44, "q_value": 5.90944767970174e-42, "fold_change": {"Her2": 0.029026332217344884, "TNBC": 0.030499137131729297, "Luminal A": 0.03620793128462144, "Luminal B": 0.028243552904532433}, "log2_fold_change": {"Her2": -5.106493906000001, "TNBC": -5.03508776262, "Luminal A": -4.787550438, "Luminal B": -5.145934605580001}}, {"symbol": "LOC101927137///ATP1A3", "feature": "214432_at", "p_value": 0.00433487566013, "q_value": 0.00586896778184061, "fold_change": {"Her2": 0.9959868334105572, "TNBC": 0.9937603392656016, "Luminal A": 0.9873719911695374, "Luminal B": 0.9917007571817732}, "log2_fold_change": {"Her2": -0.005801424379999975, "TNBC": -0.009030129460000149, "Luminal A": -0.018334374230000172, "Luminal B": -0.01202323764000024}}, {"symbol": "ATP1A1", "feature": "220948_s_at", "p_value": 0.00202411595674, "q_value": 0.002850634751882899, "fold_change": {"Her2": 1.7087845058450737, "TNBC": 1.607838905079381, "Luminal A": 1.4772881509433262, "Luminal B": 1.365715774423173}, "log2_fold_change": {"Her2": 0.7729704707699998, "TNBC": 0.6851228651699994, "Luminal A": 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Not part of the comparison: CellLine..", "groups_present": ["TNBC", "Her2", "Luminal A", "Luminal B", "CellLine", "Healthy"], "groups_compared": ["TNBC", "Her2", "Luminal A", "Luminal B", "Healthy"], "samples_present": 178, "samples_compared": 164, "groups_not_compared": ["CellLine"], "samples_not_compared": 14}, "method_inference": {"gaps": [{"kind": "no_candidate_within_tolerance", "detail": "No candidate probe reproduces the published value within the declared tolerance. 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Coincidently, ATP1A2 expression decreased by more than 2 times (p<0.05).", "cross_check": [{"kind": "summary", "unit": "fold change (ATP1A1)", "detail": "The target restates the published claim in words and is checked through the table values.", "status": "summary", "target_id": "target-atp1a1-summary", "published_value": 1.5}, {"kind": "threshold", "unit": "exclusive p-value threshold", "detail": "The target states a threshold and is applied to the run, not compared with a cell.", "status": "threshold", "target_id": "target-p-value-threshold", "published_value": 0.05}, {"kind": "cell", "unit": "relative expression fold change", "detail": "The machine-readable target and the published table cell state the same value.", "status": "agreed", "symbol": "ATP1A1", "target_id": "target-atp1a1-lum-a", "paper_group": "Lum A", "table_value": 1.53, "published_value": 1.53}, {"kind": "cell", "unit": "ANOVA p-value", "detail": "The machine-readable target and the published table cell state the same 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